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CpG islands : methods and protocols / edited by Tanya Vavouri, Miguel A. Peinado.

Contributor(s): Material type: TextTextSeries: Methods in molecular biology (Clifton, N.J.) ; v. 1766.Publisher: New York, NY : Humana Press : Springer, [2018]Copyright date: ©2018Description: 1 online resource (xi, 340 pages) : illustrations (some color)Content type:
  • text
Media type:
  • computer
Carrier type:
  • online resource
ISBN:
  • 9781493977680
  • 1493977687
Subject(s): Genre/Form: Additional physical formats: Print version:: No titleDDC classification:
  • 572.8/6 23
LOC classification:
  • QP624
Online resources:
Contents:
CpG islands : a historical perspective / Francisco Antequera and Adrian Bird -- Biochemical identification of nonmethylated DNA by BioCAP-Seq / Hannah K. Long, Nathan R. Rose, Neil P. Blackledge, and Robert J. Klose -- Prediction of CpG islands as an intrinsic clustering property found in many eukaryotic DNA sequences and its relation to DNA methylation / Cristina Gomez-Martın, Ricardo Lebron, Jose L. Oliver, and Michael Hackenberg -- CpG islands in cancer : heads, tails, and sides / Humberto J. Ferreira and Manel Esteller -- Infinium DNA methylation microarrays on formalin-fixed, paraffin-embedded samples / Sebastian Moran and Manel Esteller -- Use of methylation-sensitive multiplex ligation-dependent probe amplification for quantification of imprinted methylation / Ana Monteagudo-Sanchez, Intza Garin, Guiomar Perez de Nanclares, and David Monk -- Pancancer DNA methylation trackhub : a window to the cancer genome atlas epigenomics data / Izaskun Mallona, Alberto Sierco, and Miguel A. Peinado -- Methylation-sensitive amplification length polymorphism (MS-AFLP) microarrays for epigenetic analysis of human genomes / Sergio Alonso, Koichi Suzuki, Fumiichiro Yamamoto, and Manuel Perucho -- Genome-wide profiling of DNA methyltransferases in mammalian cells / Massimiliano Manzo, Christina Ambrosi, and Tuncay Baubec -- Experimental design and bioinformatic analysis of DNA methylation data / Yulia Medvedeva and Alexander Shershebnev -- Assay for transposase accessible chromatin (ATAC-Seq) to chart the open chromatin landscape of human pancreatic islets / Helena Raurell-Vila, Mireia Ramos-Rodrıguez, and Lorenzo Pasquali -- Defining regulatory elements in the human genome using nucleosome occupancy and methylome sequencing (NOMe-Seq) / Suhn Kyong Rhie, Shannon Schreiner, and Peggy J. Farnham -- Genome-wide mapping of protein-DNA interactions on nascent chromatin / Chenhuan Xu and Victor G. Corces -- Analysis of chromatin interactions mediated by specific architectural proteins in drosophila cells / Masami Ando-Kuri, I. Sarahi M. Rivera, M. Jordan Rowley, and Victor G. Corces -- High-throughput single-cell RNA sequencing and data analysis / Herman Josip Stefan Sagar, John Andrew Pospisilik, and Dominic Grun -- Functional insulator scanning of CpG islands to identify regulatory regions of promoters using CRISPR / Alice Grob, Masue Marbiah, and Mark Isalan -- Application-directed, versatile DNA FISH platform for research and diagnostics / Eleni Gelali, Joaquin Custodio, Gabriele Girelli, Erik Wernersson, Nicola Crosetto, and Magda Bienko.
Holdings
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Total holds: 0

Includes bibliographical references and index.

CpG islands : a historical perspective / Francisco Antequera and Adrian Bird -- Biochemical identification of nonmethylated DNA by BioCAP-Seq / Hannah K. Long, Nathan R. Rose, Neil P. Blackledge, and Robert J. Klose -- Prediction of CpG islands as an intrinsic clustering property found in many eukaryotic DNA sequences and its relation to DNA methylation / Cristina Gomez-Martın, Ricardo Lebron, Jose L. Oliver, and Michael Hackenberg -- CpG islands in cancer : heads, tails, and sides / Humberto J. Ferreira and Manel Esteller -- Infinium DNA methylation microarrays on formalin-fixed, paraffin-embedded samples / Sebastian Moran and Manel Esteller -- Use of methylation-sensitive multiplex ligation-dependent probe amplification for quantification of imprinted methylation / Ana Monteagudo-Sanchez, Intza Garin, Guiomar Perez de Nanclares, and David Monk -- Pancancer DNA methylation trackhub : a window to the cancer genome atlas epigenomics data / Izaskun Mallona, Alberto Sierco, and Miguel A. Peinado -- Methylation-sensitive amplification length polymorphism (MS-AFLP) microarrays for epigenetic analysis of human genomes / Sergio Alonso, Koichi Suzuki, Fumiichiro Yamamoto, and Manuel Perucho -- Genome-wide profiling of DNA methyltransferases in mammalian cells / Massimiliano Manzo, Christina Ambrosi, and Tuncay Baubec -- Experimental design and bioinformatic analysis of DNA methylation data / Yulia Medvedeva and Alexander Shershebnev -- Assay for transposase accessible chromatin (ATAC-Seq) to chart the open chromatin landscape of human pancreatic islets / Helena Raurell-Vila, Mireia Ramos-Rodrıguez, and Lorenzo Pasquali -- Defining regulatory elements in the human genome using nucleosome occupancy and methylome sequencing (NOMe-Seq) / Suhn Kyong Rhie, Shannon Schreiner, and Peggy J. Farnham -- Genome-wide mapping of protein-DNA interactions on nascent chromatin / Chenhuan Xu and Victor G. Corces -- Analysis of chromatin interactions mediated by specific architectural proteins in drosophila cells / Masami Ando-Kuri, I. Sarahi M. Rivera, M. Jordan Rowley, and Victor G. Corces -- High-throughput single-cell RNA sequencing and data analysis / Herman Josip Stefan Sagar, John Andrew Pospisilik, and Dominic Grun -- Functional insulator scanning of CpG islands to identify regulatory regions of promoters using CRISPR / Alice Grob, Masue Marbiah, and Mark Isalan -- Application-directed, versatile DNA FISH platform for research and diagnostics / Eleni Gelali, Joaquin Custodio, Gabriele Girelli, Erik Wernersson, Nicola Crosetto, and Magda Bienko.

Online resource; title from PDF title page (SpringerProtocol, viewed April 2, 2018).

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