TY - BOOK AU - Kaufmann,Kerstin AU - Mueller-Roeber,Bernd TI - Plant gene regulatory networks: methods and protocols T2 - Methods in molecular biology, SN - 9781493971251 AV - QH430 U1 - 572.8/65 23 PY - 2017/// CY - New York, NY, Springer PB - : Humana Press KW - Gene regulatory networks KW - Gene Regulatory Networks KW - Plants KW - genetics KW - Laboratory Manuals KW - Réseaux de régulation génique KW - Botany & plant sciences KW - bicssc KW - Science KW - Life Sciences KW - Botany KW - bisacsh KW - fast KW - Laboratory Manual KW - Laboratory manuals KW - lcgft KW - Manuels de laboratoire KW - rvmgf N1 - Includes bibliographical references and index; From genes to networks : characterizing gene-regulatory interactions in plants; Kerstin Kaufmann and Dijun Chen --; Inducible promoter systems for gene perturbation experiments in Arabidopsis; Bennett Thomson, Emmanuelle Graciet, and Frank Wellmer --; Cell type-specific gene expression profiling using fluorescence-activated nuclear sorting; Daniel Slane and Martin Bayer --; Characterization of cell-type-specific DNA binding sites of plant transcription factors using chromatin immunoprecipitation; On Sun Lau --; Yeast one- and two-hybrid high-throughput screenings using arrayed libraries; Rocío Sánchez-Montesino and Luis Oñate-Sánchez --; SELEX-seq : a method to determine DNA binding specificities of plant transcription factors; Cezary Smaczniak, Gerco C. Angenent, and Kerstin Kaufmann --; Analysis of a plant transcriptional regulatory network using transient expression Systems; Sara Díaz-Triviño, Yuchen Long, Ben Scheres, and Ikram Blilou --; Analysis of in vivo chromatin and protein interactions of Arabidopsis transcript elongation factors; Alexander Pfab, Wojciech Antosz, Philipp Holzinger, Astrid Bruckmann, Joachim Griesenbeck, and Klaus D. Grasser --; Characterization of mediator complex and its associated proteins from rice; Subhasis Samanta and Jitendra Kumar Thakur --; DNase I SIM : a simplified in-nucleus method for DNase I hypersensitive site sequencing; Sergei A. Filichkin and Molly Megraw --; In situ Hi-C library preparation for plants to study their three-dimensional chromatin interactions on a genome-wide scale; Chang Liu --; Multiplexed transcriptional activation or repression in plants using CRISPR-dCas9-based systems; Levi G. Lowder, Joseph W. Paul III, and Yiping Qi --; Generation of dTALEs and libraries of synthetic TALE-activated promoters for engineering of gene regulatory networks in plants; Tom Schreiber and Alain Tissier --; Design of knowledge bases for plant gene regulatory networks; Eric Mukundi, Fabio Gomez-Cano, Wilberforce Zachary Ouma, and Erich Grotewold --; AraNet : a network biology server for Arabidopsis thaliana and other non-model plant species; Tak Lee and Insuk Lee --; Integration of genome-wide TF binding and gene expression data to characterize gene regulatory networks in plant development; Dijun Chen and Kerstin Kaufmann --; Predicting transcription factor binding sites and their cognate transcription factors using gene expression data; Chun-Ping Yu and Wen-Hsiung Li --; Computational approaches to study gene regulatory networks; Nooshin Omranian and Zoran Nikoloski --; Boolean dynamic modeling approaches to study plant gene regulatory networks : integration, validation, and prediction; José Dávila Velderraín, Juan Carlos Martínez-García, and Elena R. Álvarez-Buylla --; ODE-based modeling of complex regulatory circuits; Daniel D. Seaton --; Inferring gene regulatory networks in the Arabidopsis root using a dynamic Bayesian network approach; Maria Angels de Luis Balaguer and Rosangela Sozzani UR - https://link-springer-com.libraryproxy.ist.ac.at/10.1007/978-1-4939-7125-1 ER -