Computational methods in protein evolution / edited by Tobias Sikosek.

Includes bibliographical references and index.

Predicting the effect of mutations on protein folding and protein-protein interactions / Alexey Strokach, Carles Corbi-Verge, Joan Teyra, and Philip M. Kim -- Accurate calculation of free energy changes upon amino acid mutation / Matteo Aldeghi, Bert L. de Groot, and Vytautas Gapsys -- Protocols for the molecular evolutionary analysis of membrane protein gene duplicates / Laurel R. Yohe, Liang Liu, Liliana M. Davalos, and David A. Liberles -- Computational prediction of de novo emerged protein-coding genes / Nikolaos Vakirlis and Aoife McLysaght -- Coevolutionary signals and structure-based models for the prediction of protein native conformations / Ricardo Nascimento dos Santos, Xianli Jiang, Leandro Martinez, and Faruck Morcos -- Detecting amino acid coevolution with bayesian graphical models / Mariano Avino and Art F.Y. Poon -- Context-dependent mutation effects in proteins / Frank J. Poelwijk -- High-throughput reconstruction of ancestral protein sequence, structure, and molecular function / Kelsey Aadland, Charles Pugh, and Bryan Kolaczkowski -- Ancestral sequence reconstruction as a tool for the elucidation of a stepwise evolutionary adaptation / Kristina Straub and Rainer Merkl -- Enhancing statistical multiple sequence alignment and tree inference using structural information / Joseph L. Herman -- Influence of protein stability on sequence evolution : applications to phylogenetic inference / Ugo Bastolla and Miguel Arenas -- Navigating among known structures in protein space / Aya Narunsky, Nir Ben-Tal, and Rachel Kolodny -- Graph-based approach for detecting sequence homology in highly diverged repeat protein families / Jonathan N. Wells and Joseph A. Marsh -- Exploring enzyme evolution from changes in sequence, structure, and function / Jonathan D. Tyzack, Nicholas Furnham, Ian Sillitoe, Christine M. Orengo, and Janet M. Thornton -- Identification of protein homologs and domain boundaries by iterative sequence alignment / Dustin Schaeffer and Nick V. Grishin -- Roadmap to domain based proteomics / Carsten Kemena and Erich Bornberg-Bauer -- Modeling of protein tertiary and quaternary structures based on evolutionary information / Gabriel Studer, Gerardo Tauriello, Stefan Bienert, Andrew Mark Waterhouse, Martino Bertoni, Lorenza Bordoli, Torsten Schwede, and Rosalba Lepore -- Interface-based structural prediction of novel host-pathogen interactions / Emine Guven-Maiorov, Chung-Jung Tsai, Buyong Ma, and Ruth Nussinov -- Predicting functions of disordered proteins with MoRFpred / Christopher J. Oldfield, Vladimir N. Uversky, and Lukasz Kurgan -- Exploring protein conformational diversity / Alexander Miguel Monzon, Maria Silvina Fornasari, Diego Javier Zea, and Gustavo Parisi -- High-throughput antibody structure modeling and design using ABodyBuilder / Jinwoo Leem and Charlotte M. Deane -- In silico-directed evolution using CADEE / Beat Anton Amrein, Ashish Runthala, and Shina Caroline Lynn Kamerlin.

Online resource; title from PDF title page (SpringerLink, viewed October 8, 2018).