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Transcription factor regulatory networks / edited by Qi Song, Zhipeng Tao.

Contributor(s): Material type: TextTextSeries: Methods in molecular biology (Clifton, N.J.) ; v. 2594. | Springer protocols (Series)Publisher: New York, NY : Humana Press, [2023]Copyright date: ©2023Description: 1 online resource (1 PDF file (xii, 226 pages)) : illustrations (chiefly color)Content type:
  • text
Media type:
  • computer
Carrier type:
  • online resource
ISBN:
  • 9781071628157
  • 1071628151
Uniform titles:
  • Transcription factor regulatory networks (Song)
Subject(s): Genre/Form: DDC classification:
  • 572.8/845 23/eng/20221028
LOC classification:
  • QP552.T68
NLM classification:
  • W1
  • QU 25
Online resources:
Contents:
The TARGET System: Rapid Identification of Direct Targets of Transcription Factors by Gene Regulation in Plant Cells -- The Method of Screening and Identification of Transcription Factor in Klebiella -- Genome-Wide Identification of Open Chromatin in Plants Using MH-Seq -- Post-Bisulfite Adaptor Tagging with a Highly Efficient Single-Stranded DNA Ligation Technique -- Perturbation of Gene Regulation by Genome Editing -- Analysis of Neutrophil Morphology and Function under Genetic Perturbation of Transcription Factors In Vitro -- Detection of TP53 Mutation in Acute Myeloid Leukemia by RT-PCR-Based Sanger Sequencing -- Assessing the Activity of Transcription Factor FoxO1 -- Targeting Transcription Factors in Cancer: From "Undruggable" to "Druggable" -- A Survey of Transcription Factors in Cell Fate Control -- Single Cell mRNA-Seq of In Vitro-Derived Human Neurons Using Smart-Seq2 -- Computational Analysis of Single Cell RNA-Seq Data -- Database for Plant Transcription Factor Binding Sites -- MicroRNA Regulatory Network Analysis Using miRNet 2.0 -- Modeling Plant Transcription Factor Networks Using ConSReg -- Identification of Plant Co-Regulatory Modules Using CoReg.
Summary: This book covers various state-of-the-art techniques regarding the associations between transcription factors (TFs) and genes, with a focus on providing methodological and practical references for researchers. The contents cover diverse protocols and summaries of TFs including screening of TF-DNA interactions, detection of open chromatin regions, identification of epigenetic regulations, engineering TFs with genome editing tools, detection of transcriptional activities, computational analysis of TF networks, functions and druggabilities of TFs in biomedical research, and much more. Written for the highly successful Methods in Molecular Biology series, chapters feature the kind of detailed implementation advice from the experts to ensure successful research results. Authoritative and cutting-edge, Transcription Factor Regulatory Networks aims to benefit readers who are interested in using state-of-the-art techniques to study TFs and their myriad effects in cellular life.
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Includes bibliographical references and index.

The TARGET System: Rapid Identification of Direct Targets of Transcription Factors by Gene Regulation in Plant Cells -- The Method of Screening and Identification of Transcription Factor in Klebiella -- Genome-Wide Identification of Open Chromatin in Plants Using MH-Seq -- Post-Bisulfite Adaptor Tagging with a Highly Efficient Single-Stranded DNA Ligation Technique -- Perturbation of Gene Regulation by Genome Editing -- Analysis of Neutrophil Morphology and Function under Genetic Perturbation of Transcription Factors In Vitro -- Detection of TP53 Mutation in Acute Myeloid Leukemia by RT-PCR-Based Sanger Sequencing -- Assessing the Activity of Transcription Factor FoxO1 -- Targeting Transcription Factors in Cancer: From "Undruggable" to "Druggable" -- A Survey of Transcription Factors in Cell Fate Control -- Single Cell mRNA-Seq of In Vitro-Derived Human Neurons Using Smart-Seq2 -- Computational Analysis of Single Cell RNA-Seq Data -- Database for Plant Transcription Factor Binding Sites -- MicroRNA Regulatory Network Analysis Using miRNet 2.0 -- Modeling Plant Transcription Factor Networks Using ConSReg -- Identification of Plant Co-Regulatory Modules Using CoReg.

This book covers various state-of-the-art techniques regarding the associations between transcription factors (TFs) and genes, with a focus on providing methodological and practical references for researchers. The contents cover diverse protocols and summaries of TFs including screening of TF-DNA interactions, detection of open chromatin regions, identification of epigenetic regulations, engineering TFs with genome editing tools, detection of transcriptional activities, computational analysis of TF networks, functions and druggabilities of TFs in biomedical research, and much more. Written for the highly successful Methods in Molecular Biology series, chapters feature the kind of detailed implementation advice from the experts to ensure successful research results. Authoritative and cutting-edge, Transcription Factor Regulatory Networks aims to benefit readers who are interested in using state-of-the-art techniques to study TFs and their myriad effects in cellular life.

Description based on online resource; title from PDF title page (SpringerLink, viewed October 28, 2022).

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