Plant gene regulatory networks : methods and protocols /
Plant gene regulatory networks : methods and protocols /
edited by Kerstin Kaufmann, Bernd Mueller-Roeber.
- 1 online resource (xi, 350 pages) : illustrations (some color)
- Methods in molecular biology, volume 1629 1064-3745 ; .
- Methods in molecular biology (Clifton, N.J.) ; v. 1629. .
Includes bibliographical references and index.
From genes to networks : characterizing gene-regulatory interactions in plants / Inducible promoter systems for gene perturbation experiments in Arabidopsis / Cell type-specific gene expression profiling using fluorescence-activated nuclear sorting / Characterization of cell-type-specific DNA binding sites of plant transcription factors using chromatin immunoprecipitation / Yeast one- and two-hybrid high-throughput screenings using arrayed libraries / SELEX-seq : a method to determine DNA binding specificities of plant transcription factors / Analysis of a plant transcriptional regulatory network using transient expression Systems / Analysis of in vivo chromatin and protein interactions of Arabidopsis transcript elongation factors / Characterization of mediator complex and its associated proteins from rice / DNase I SIM : a simplified in-nucleus method for DNase I hypersensitive site sequencing / In situ Hi-C library preparation for plants to study their three-dimensional chromatin interactions on a genome-wide scale / Multiplexed transcriptional activation or repression in plants using CRISPR-dCas9-based systems / Generation of dTALEs and libraries of synthetic TALE-activated promoters for engineering of gene regulatory networks in plants / Design of knowledge bases for plant gene regulatory networks / AraNet : a network biology server for Arabidopsis thaliana and other non-model plant species / Integration of genome-wide TF binding and gene expression data to characterize gene regulatory networks in plant development / Predicting transcription factor binding sites and their cognate transcription factors using gene expression data / Computational approaches to study gene regulatory networks / Boolean dynamic modeling approaches to study plant gene regulatory networks : integration, validation, and prediction / ODE-based modeling of complex regulatory circuits / Inferring gene regulatory networks in the Arabidopsis root using a dynamic Bayesian network approach / Kerstin Kaufmann and Dijun Chen -- Bennett Thomson, Emmanuelle Graciet, and Frank Wellmer -- Daniel Slane and Martin Bayer -- On Sun Lau -- Rocío Sánchez-Montesino and Luis Oñate-Sánchez -- Cezary Smaczniak, Gerco C. Angenent, and Kerstin Kaufmann -- Sara Díaz-Triviño, Yuchen Long, Ben Scheres, and Ikram Blilou -- Alexander Pfab, Wojciech Antosz, Philipp Holzinger, Astrid Bruckmann, Joachim Griesenbeck, and Klaus D. Grasser -- Subhasis Samanta and Jitendra Kumar Thakur -- Sergei A. Filichkin and Molly Megraw -- Chang Liu -- Levi G. Lowder, Joseph W. Paul III, and Yiping Qi -- Tom Schreiber and Alain Tissier -- Eric Mukundi, Fabio Gomez-Cano, Wilberforce Zachary Ouma, and Erich Grotewold -- Tak Lee and Insuk Lee -- Dijun Chen and Kerstin Kaufmann -- Chun-Ping Yu and Wen-Hsiung Li -- Nooshin Omranian and Zoran Nikoloski -- José Dávila Velderraín, Juan Carlos Martínez-García, and Elena R. Álvarez-Buylla -- Daniel D. Seaton -- Maria Angels de Luis Balaguer and Rosangela Sozzani.
9781493971251 1493971255
com.springer.onix.9781493971251 Springer Nature
GBB8O3871 bnb
101712305 DNLM 019183905 Uk
Gene regulatory networks.
Gene Regulatory Networks
Plants--genetics
Laboratory Manuals
Réseaux de régulation génique.
Botany & plant sciences.
Science--Life Sciences--Botany.
Gene regulatory networks
Laboratory Manual
Laboratory manuals
Laboratory manuals.
Manuels de laboratoire.
QH430
572.8/65
QU 25
Includes bibliographical references and index.
From genes to networks : characterizing gene-regulatory interactions in plants / Inducible promoter systems for gene perturbation experiments in Arabidopsis / Cell type-specific gene expression profiling using fluorescence-activated nuclear sorting / Characterization of cell-type-specific DNA binding sites of plant transcription factors using chromatin immunoprecipitation / Yeast one- and two-hybrid high-throughput screenings using arrayed libraries / SELEX-seq : a method to determine DNA binding specificities of plant transcription factors / Analysis of a plant transcriptional regulatory network using transient expression Systems / Analysis of in vivo chromatin and protein interactions of Arabidopsis transcript elongation factors / Characterization of mediator complex and its associated proteins from rice / DNase I SIM : a simplified in-nucleus method for DNase I hypersensitive site sequencing / In situ Hi-C library preparation for plants to study their three-dimensional chromatin interactions on a genome-wide scale / Multiplexed transcriptional activation or repression in plants using CRISPR-dCas9-based systems / Generation of dTALEs and libraries of synthetic TALE-activated promoters for engineering of gene regulatory networks in plants / Design of knowledge bases for plant gene regulatory networks / AraNet : a network biology server for Arabidopsis thaliana and other non-model plant species / Integration of genome-wide TF binding and gene expression data to characterize gene regulatory networks in plant development / Predicting transcription factor binding sites and their cognate transcription factors using gene expression data / Computational approaches to study gene regulatory networks / Boolean dynamic modeling approaches to study plant gene regulatory networks : integration, validation, and prediction / ODE-based modeling of complex regulatory circuits / Inferring gene regulatory networks in the Arabidopsis root using a dynamic Bayesian network approach / Kerstin Kaufmann and Dijun Chen -- Bennett Thomson, Emmanuelle Graciet, and Frank Wellmer -- Daniel Slane and Martin Bayer -- On Sun Lau -- Rocío Sánchez-Montesino and Luis Oñate-Sánchez -- Cezary Smaczniak, Gerco C. Angenent, and Kerstin Kaufmann -- Sara Díaz-Triviño, Yuchen Long, Ben Scheres, and Ikram Blilou -- Alexander Pfab, Wojciech Antosz, Philipp Holzinger, Astrid Bruckmann, Joachim Griesenbeck, and Klaus D. Grasser -- Subhasis Samanta and Jitendra Kumar Thakur -- Sergei A. Filichkin and Molly Megraw -- Chang Liu -- Levi G. Lowder, Joseph W. Paul III, and Yiping Qi -- Tom Schreiber and Alain Tissier -- Eric Mukundi, Fabio Gomez-Cano, Wilberforce Zachary Ouma, and Erich Grotewold -- Tak Lee and Insuk Lee -- Dijun Chen and Kerstin Kaufmann -- Chun-Ping Yu and Wen-Hsiung Li -- Nooshin Omranian and Zoran Nikoloski -- José Dávila Velderraín, Juan Carlos Martínez-García, and Elena R. Álvarez-Buylla -- Daniel D. Seaton -- Maria Angels de Luis Balaguer and Rosangela Sozzani.
9781493971251 1493971255
com.springer.onix.9781493971251 Springer Nature
GBB8O3871 bnb
101712305 DNLM 019183905 Uk
Gene regulatory networks.
Gene Regulatory Networks
Plants--genetics
Laboratory Manuals
Réseaux de régulation génique.
Botany & plant sciences.
Science--Life Sciences--Botany.
Gene regulatory networks
Laboratory Manual
Laboratory manuals
Laboratory manuals.
Manuels de laboratoire.
QH430
572.8/65
QU 25