Plant gene regulatory networks : methods and protocols / edited by Kerstin Kaufmann, Bernd Mueller-Roeber.

Includes bibliographical references and index.

From genes to networks : characterizing gene-regulatory interactions in plants / Kerstin Kaufmann and Dijun Chen -- Inducible promoter systems for gene perturbation experiments in Arabidopsis / Bennett Thomson, Emmanuelle Graciet, and Frank Wellmer -- Cell type-specific gene expression profiling using fluorescence-activated nuclear sorting / Daniel Slane and Martin Bayer -- Characterization of cell-type-specific DNA binding sites of plant transcription factors using chromatin immunoprecipitation / On Sun Lau -- Yeast one- and two-hybrid high-throughput screenings using arrayed libraries / Rocío Sánchez-Montesino and Luis Oñate-Sánchez -- SELEX-seq : a method to determine DNA binding specificities of plant transcription factors / Cezary Smaczniak, Gerco C. Angenent, and Kerstin Kaufmann -- Analysis of a plant transcriptional regulatory network using transient expression Systems / Sara Díaz-Triviño, Yuchen Long, Ben Scheres, and Ikram Blilou -- Analysis of in vivo chromatin and protein interactions of Arabidopsis transcript elongation factors / Alexander Pfab, Wojciech Antosz, Philipp Holzinger, Astrid Bruckmann, Joachim Griesenbeck, and Klaus D. Grasser -- Characterization of mediator complex and its associated proteins from rice / Subhasis Samanta and Jitendra Kumar Thakur -- DNase I SIM : a simplified in-nucleus method for DNase I hypersensitive site sequencing / Sergei A. Filichkin and Molly Megraw -- In situ Hi-C library preparation for plants to study their three-dimensional chromatin interactions on a genome-wide scale / Chang Liu -- Multiplexed transcriptional activation or repression in plants using CRISPR-dCas9-based systems / Levi G. Lowder, Joseph W. Paul III, and Yiping Qi -- Generation of dTALEs and libraries of synthetic TALE-activated promoters for engineering of gene regulatory networks in plants / Tom Schreiber and Alain Tissier -- Design of knowledge bases for plant gene regulatory networks / Eric Mukundi, Fabio Gomez-Cano, Wilberforce Zachary Ouma, and Erich Grotewold -- AraNet : a network biology server for Arabidopsis thaliana and other non-model plant species / Tak Lee and Insuk Lee -- Integration of genome-wide TF binding and gene expression data to characterize gene regulatory networks in plant development / Dijun Chen and Kerstin Kaufmann -- Predicting transcription factor binding sites and their cognate transcription factors using gene expression data / Chun-Ping Yu and Wen-Hsiung Li -- Computational approaches to study gene regulatory networks / Nooshin Omranian and Zoran Nikoloski -- Boolean dynamic modeling approaches to study plant gene regulatory networks : integration, validation, and prediction / José Dávila Velderraín, Juan Carlos Martínez-García, and Elena R. Álvarez-Buylla -- ODE-based modeling of complex regulatory circuits / Daniel D. Seaton -- Inferring gene regulatory networks in the Arabidopsis root using a dynamic Bayesian network approach / Maria Angels de Luis Balaguer and Rosangela Sozzani.

Online resource; title from PDF title page (SpringerLink, viewed June 19, 2017).